Scientific contributions

Main publications

See my ORCID page for a full list.

• 2024:

  • Phosphorus recycling from human excreta in French agroecosystems and potential for food self-sufficiency, Nutrient Cycling in Agroecosystems (2024), DOI: 10.1007/s10705-024-10367-4, PDF: hal-04232701.

  • Revising clustering and small-worldness in brain networks, in preprint: hal-04427288.

• 2023:

  • Fate of nitrogen in French human excreta: Current waste and agronomic opportunities for the future, Science of The Total Environment (2023), DOI: 10.1016/j.scitotenv.2023.168978, PDF: hal-04232722.

• 2021:

  • Weighted directed clustering: interpretations and requirements for heterogeneous, inferred, and measured networks, PRR (2021), DOI: 10.1103/PhysRevResearch.3.043124 [pdf]

• 2020:

  • Energy-based models to describe complex neuronal activities and metabolic constraints, PLOS CB (2020), DOI: 10.1371/journal.pcbi.1008503 [pdf].

  • Making Science Organizations Sustainable — The Mission of the Max Planck Sustainability Network, Frontiers in Sustainability (2020), DOI: 10.3389/frsus.2020.567211 [pdf]

• 2018:

  • Understanding the Generation of Network Bursts by Adaptive Oscillatory Neurons, Frontiers in Neuroscience (2018), DOI: 10.3389/fnins.2018.00041 [pdf]

  • Neuronal devices: understanding neuronal cultures through percolation helps prepare for the next step, EPJST (2018), DOI: 10.1140/epjst/e2018-800072-1 [pdf]

  • Effects of inhibitory neurons on the quorum percolation model and dynamical extension with the Brette-Gerstner model, Physica A (2018), DOI: 10.1016/j.physa.2018.02.002 [pdf]

Talks

• Scenarios for nutrient recovery from urban organic matter, RAMIRAN 2023 (video)

• Multiscale urban deposits and logistics to reuse human excreta in agriculture, CCS 2023 (talk ID: 299147)

• Données sur les matières organiques urbaines, Séminaire BETTER 2023 (vidéo)

• Pathways for circular agri-food ecosystems, Transdisciplinary Research for a Healthy Planet 2023 Symposium (video)

• NNGT: generation and structure-aware analysis of neuronal networks, NEST Conference 2017 (notes).

• Comprendre la biophysique des bursts d'activités dans des réseaux neuronaux grâce à un modèle dynamique 2D, RNL 2017 (abstract).

Outreach

• Towards circular agri-food ecosystems: nutrient recovery from urine, feces, and biowaste, Fediverse Solstice School 2023 (video, slides, transcript)

• Towards humanure? (fertilizers from human excreta), tribune in JAMAG, in French

• Truly circular dorayaki at the Tomo bakery (video)

Posters

• Revisiting and revising clustering in brain networks (video), COSYNE 2021.

• Investigating the influence of metabolic disruption on complex activity patterns with extended neuronal models (abstract, video), Bernstein Conference 2020.

• Better weighted clustering coefficient: now continuous (abstract, video), Complex Networks 2020.

• Phenomenological models for single-neuron energetics (abstract), Bernstein Conference 2019.

• DeNSE: modeling neuronal morphology and network structure (abstract, poster), CNS*2019.

• Predicting the effect of drugs and network structure on the bursting activity of neuronal cultures (abstract), SfN 2017 (Washington, DC).

• Paving the way to neuronal devices, BrainDisc 2017 (Freiburg).

• How does seizure initiate in neuronal cultures? JSPS summer program 2017 (Kanagawa-ken).

Software

• the CAFE suite (OrgMatt, gistools, pyCAFE...)

• NNGT (maintainer) DOI: 10.5281/zenodo.3402493

• mpl_chord_diagram (maintainer) DOI: 10.5281/zenodo.6583470

• pynsee (maintainer)

• DeNSE (inactive, maintainer)

• NEST (former contributor) DOI: 10.5281/zenodo.4739103

• NESTML (former contributor) DOI: 10.5281/zenodo.4740083

• Minor contributions:

  • NetworkX and igraph (bugfix and discussions/improvements)

  • Cartopy (minor improvement)

  • Shapely (minor improvement)

Others

• Models: eLIF and mAdExp neuronal models

• Peer reviews: here.