Software¶
Some open-source software for network science and neuroscience.
Libraries I'm working on¶
DeNSE (simulator for neuronal growth)
network generation and analysis)mpl-chord-diagram (a library to draw chord diagrams in Python)
NNGT (unified graph library interface and improvements for neuronal
Simulations¶
Neuronal activity¶
BRIAN: a python-based simulator with custom model descriptions
NEST simulator: a library for large-scale parallel simulation of
the activity of neuronal networksNEURON: a detailed multicompartmental simulator for neuronal dynamics
PyNN: a simulator-independent language for building neuronal networks.
Model development¶
NESTML: NEST modeling language
Analysis¶
Neo for electrophysiological data
Graph-tool for network structure analysis